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ToxiTaRGET Database


Database of Toxicant Exposures and Responses :
contains in-depth analysis results across all exposures and assays.

Protocol Documents


  • ATACseqDocuments.docx
  • Quality Control Parameter.docx
  • RNAseqDocuments.docx
  • Common File Formats Used by the TaRGET II Consortium.docx
  • Data Use Policy for External Users.docx
  • Data release policies.docx
  • Experimental procedures.docx

Standard Operating Procedures


  • SOP_Blood_Processing.pdf
  • SOP_Mouse_liver_collection.pdf
  • SOP_Whole_mouse_perfusion_blood_protocol.pdf

Library Construction Protocols


  • Aylor_ATACseq_Omni.pdf
  • Aylor_RNAseq_Kapa.pdf
  • Bartolomei_ATACseq_FastATAC.pdf
  • Bartolomei_ATACseq_Omni.pdf
  • Bartolomei_RNAseq_Kapa.pdf
  • Bartolomei_RNAseq_ScriptSeq.pdf
  • Biswal_ATACseq_FastATAC.pdf
  • Biswal_ATACseq_Omni.pdf
  • Biswal_RNAseq_TruSeq.pdf
  • Dolinoy_ATACseq_MichiganEpiCore.pdf
  • Dolinoy_RNAseq_TruSeq.pdf
  • Mutlu_ATACseq_FastATAC.pdf
  • Mutlu_ATACseq_Omni.pdf
  • Mutlu_RNAseq_TruSeq.pdf
  • Walker_ATACseq_Omni.pdf
  • Walker_RNAseq_Truseq.pdf
  • ZhibinWang_ATACseq_Omni.pdf
  • ZhibinWang_RNAseq_TruSeq.pdf

Standardized Pipelines for data processing


  • TaRGET II - ATAC-seq Pipeline
  • TaRGET II - RNA-seq Pipeline
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